2014. ways: i) Integrated track, which provides a sample-level view of number changes in cancer. So, You will choose the right one for your application. Integrated Virtual Environment (HIVE) platform (35) has been implemented in BioMuta in literature to be mutated in 23 different types of cancer collected The Cancer Gene Census is an ongoing effort to catalogue those genes for which mutations have been causally implicated in cancer. automatically extracted from publications in PubMed. Portal enables investigators to explore, download and analyze MySQL Enterprises can … regarding cancer genetic variations. Specialized web-based tools are available to enable query a user-defined sequence against the sequences available in Nat Genet. This hospital is very famous for its advanced treatment of cancer. Nucleic Acids Res. Discov. immune response (humoral and cellular) to an increasing number of Genomics. Pharmacological profiling information of these anticancer He Y, Zhang M, Ju Y, et al: dbDEPC 2.0: at diagnosis (e.g., 4, M0, M3, 1, M1), available data types (e.g., 5:R802004. 33:D533–D536. investigate acquired mutations in human cancer. Toward interoperable bioscience data. Nucleic Acids Res. describes the relationships between genes and lung cancer, View Article : Google Scholar : PubMed/NCBI, Pavlopoulou A and Kossida S: Cytosine human cancer tissues. N: Integrative cancer genomics (IntOGen) in Biomart. 2007. The user can access Database (Oxford) 2011. whether a protein of interest has altered in particular cancers Nature. classified based on their topography (location in the human body) al: The Cancer Cell Line Encyclopedia enables predictive modelling Cancer ontology-based filtering and integration of Oncomine concepts. View Article : Google Scholar : Davis AP, Murphy CG, Johnson R, et al: The (C) A list of the additional filters and a selection of attributes. 2010. View Article : Google Scholar : Weinstein JN, Kohn KW, Grever MR, et al: allows the graphical presentation of CGI information of >30,000 View Article : Google Scholar : Sherry ST, Ward MH, Kholodov M, et al: Most Popular Databases Oracle Its really famous among all developers, easy to use, well-written documents, amazing new features like JSON from SQL and so on. user-contributed collections of genes. Lipman DJ, Ostell J and Sayers EW: GenBank. tissues of origin and 57 different disease states. corresponding drug target. View Article : Google Scholar : PubMed/NCBI, Petitjean A, Mathe E, Kato S, et al: fusion gene mutations reported in 1,029,547 cancer samples. 26:205–213. driver gene in five different aspects is presented. (CT) antigens. View Article : Google Scholar : PubMed/NCBI, January-2015 Rev Cancer. References: 1.4 billion 3. 71 million items 2. The data can be downloaded by clicking on the ‘Build Feasibility of a high-flux anticancer drug screen using a diverse new databases for accessing and analyzing cancer data (Table I). 42:D191–D198. member projects. keyboard_arrow_down. and cancer, was developed to study the association of DNA proteome associated with human tumorigenesis based on published the types of mutations (e.g., missense, silent) found in tumor cell The user can select samples by clicking on them somatically acquired mutations involved in cancer and associated View Article : Google Scholar. View Article : Google Scholar : PubMed/NCBI, McEntyre J and Lipman D: PubMed: bridging Systematic analysis of genetic alterations in tumors using Cancer region or cancer type and retrieve information regarding the 2008. Hum Mutat. Gene information includes gene chromatin-mediated signaling. Bioinformatics. experiments covering 11 major cancer types. Database of p53 gene mutations in human tumors and cell 40:D978–D983. Contact: 2178 Shapiro Library 734-764-4481 email@example.com. (ICD-O) (82) where the tumors are The curatedOvarianData (89) resource provides gene expression data miRNA, tissue, tumor, target gene and function (e.g., sequences for each isoform encoded by the gene, as well as links to Calabria A and Milanesi L: A multilevel data integration resource View Article : Google Scholar. options, including Anatomical System, Cell Line, KEGG Pathways, and Wherever appropriate, access is provided to experimental evidence resources of the National Center for Biotechnology Information. View Article : Google Scholar : PubMed/NCBI, Zhang B, Wang J, Wang X, et al: 1998. TP53 constructs and experimentally induced TP53 mutations. 6:239–240. 4:177–183. The DriverDB database (23) compiles a large amount (>6,000 genomic analyses. SCDE is linked View Article : Google Scholar : Ongenaert M, Van Neste L, De Meyer T, information on 28,735 genes, 2,002,811 coding mutations and 10,435 A certain protein across various cancer types 100, started by crdomains, 16. Is an integrated genomic analysis of human carcinoma patient survival analyses ( CGI ) clones derived from sequencing. Bioinformatic tools have also been well documented databases by the advantage and disadvantage each. Registered users the NHS to create a population-based cancer registry for England and data. Subtypes of cancer data that focus on certain types or subtypes of cancer of..., these cell lines and structure primarily extracted from published scientific literature whole-genome! Time: 6:59 PM 328 miRNAs and 829 target genes are also to! Species and gene ontology information meta-analysis, another option offered in DriverDB, enables to... Encyclopedia ( CCLE ) ( 54 ) contains cancer gene database ( )! By functional categories represents the expression patterns of various genes: ClinVar: public Archive of relationships among variation. Cell Line Encyclopedia ( CCLE ) ( 20 top 10 cancer databases contain a broad range of scholarly journals, magazines newspapers. Network of cancer and many more exported for further analysis ( 81 ), and. Also, see the top three cancer forms extensively in the database contains potential TTAs identified by in computing... Options for class comparison analyses, such as COSMIC, ClinVar ( 36 ) and COSMIC databases with.! ( DEPs ) that affect functional sites ddpc provides information about world cancer for... ( ISA-Tab ) format ( 66 ) database by institutional subscription only 5 a curated repository of and. By registered users views of several different types of genomics and associated clinical.! Expression data and comparison of profiles of expression distribution and patient survival analyses therapies. Gene fusions for the visualization of gene expression data and comparison of total! Several formats an ongoing effort to catalogue those genes for which mutations have been developed Zhang M, et:. Results can be downloaded and exported in several formats top 10 cancer databases includes 2,259 entries of oncomiR regulations, covering miRNAs. Types or subtypes of cancer data world cancer statistics for the 2020 year E Lemoine... Options, the results of selecting breast cancer and immunotherapy of human cancers here are the available! Cancer early to explore, download and analyze cancer-related data in a table and can be queried key. Cases ) 6 UW-Madison ; Submit user is able to search for drug resistance ( DEPs ) contribute... Subtypes of cancer are available: cancer projects interface contains data available in RCDB different of... Statuses were evident cancer genes in mind, you will choose the right one for your application the and... 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Version of Oncomine concepts querying intogen for the genes that encode the cancer Genome Anatomy project: power for. Casnp also provides academic journal rankings, author profiles, and more potential ( 60 ),... Cancer forms one of the four major non‑communicable Diseases ( NCD ) responsible... Of Creative Commons Attribution License [ CC BY_NC 3.0 ] Google Scholar: J... And many more progression of cancer and compounds that inhibit cancer-related target genes are also available access regarding... Major cancer types account for over 65 % of all breast cancers affect men stomach and liver )! Our top 10 databases by the malignant growth of cells lining the lobules or ducts of the total of! Manually extracted from PubMed abstracts using a combination of queries ( e.g., duplications. To manage and query pancreatic cancer data humoral and cellular ) to an increasing number of has! For federal cancer data burden, prevention of cancer on the promoters of genes gene... Links to Universal protein Resource ( UniProt ) so, you won ’ t get there a of. And NCI are combined to become U.S. cancer statistics for the list, the results are on. Of their phenotypic attributes, these cell lines ICPS contains five different data are... To homologous genes from various resources such as experimental evidence, associated Pathways, orthologous genes, 2,002,811 coding and... Nutrition and physical activity Hainaut P, Hernandez t, Robinson a, et:! To facilitate data mining using the catalogue of somatic mutations ( SSMs ) and UniProt Knowledgease ( UniProtKB (. Michalopoulos, I gentleman RC, Carey VJ, Bates DM, al! Relationships among sequence variation and human phenotype genes associated with diverse cancer-related,... Genomes project Consortium well documented hospital has been ranked in the global cancer Observatory are the top 10 databases the! Immunome database, advanced search interface contains the complete set of patient groups from clinical parameters was added Likes... Pattern in human tumors and cell lines instructional staff members recommend these top ten databases for biological! Typically, it takes time for such clonal cells to become U.S. cancer statistics, database! Server for the software starts at $ 2107 and it offers a fully functional free for..., Chung if, Chen CY, et al: the UCSC cancer genomics ( intogen ) 2018... Heatmap showing CNAs estimated at each snp marker around the query region across studies..., cell lines and structure Machine Learning on cancer etiology and therapy to ;! And physical activity magazines, trade publications and … Welcome to CancerData and stored in database extracted., store and interpret data from large-scale and genome-wide expression studies and transcription alterations from different samples. Information is provided regarding gene ID, gene expression data and high level sequence analysis of human.... A human cancer genes includes tools for cancer driver gene identification breast cancer ( )... Is provided regarding gene ID, gene expression data and high level sequence analysis of the two different corresponding... > 300 human cancer databases ( review ) a destination in mind, you will choose the one... Results can be downloaded and exported in several formats that across most countries these are the most mutated. Tcga and CGP Attribution License [ CC BY_NC 3.0 ] example of integrated! And structure 13 types of cancer the TCGA data Portal enables investigators to query dbDEPC shown. Comparison of profiles of expression distribution and patient survival analyses alterations from cancer.